obsolete reference gene allele [GENO_0000060]

A version/allele of a gene that serves as a standard against which variant genes are compared. Being a ‘reference gene’ is a role or status assigned in the context of a specific dataset or analysis. In human variation datasets, ‘reference’ status is typically assigned based on factors such as being the most common version/allele in a population, being an ancestral allele, or being indentified first as a prototypical example of a gene. In model organism datasets, ‘reference’ genes are typically the ‘wild-type’ allele for a given gene, representing a functional and unaltered version of the gene that is part of a defined genomic background, and against which natural or experimentally-induced versions are compared.
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Open obsolete reference gene allele in VFB

Term Information

  • ID: GENO_0000060
  • Name: obsolete reference gene allele
  • Definition: A version/allele of a gene that serves as a standard against which variant genes are compared.
  • Synonyms:
  • Type:
  • Comment: Being a ‘reference gene’ is a role or status assigned in the context of a specific dataset or analysis. In human variation datasets, ‘reference’ status is typically assigned based on factors such as being the most common version/allele in a population, being an ancestral allele, or being indentified first as a prototypical example of a gene. In model organism datasets, ‘reference’ genes are typically the ‘wild-type’ allele for a given gene, representing a functional and unaltered version of the gene that is part of a defined genomic background, and against which natural or experimentally-induced versions are compared.

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/GENO_0000060",
            "symbol": "",
            "types": [
                "Entity",
                "Class",
                "Deprecated"
            ],
            "short_form": "GENO_0000060",
            "unique_facets": [
                "Deprecated"
            ],
            "label": "obsolete reference gene allele"
        },
        "description": [
            "A version/allele of a gene that serves as a standard against which variant genes are compared."
        ],
        "comment": [
            "Being a 'reference gene' is a role or status assigned in the context of a specific dataset or analysis.  In human variation datasets, 'reference' status is typically assigned based on factors such as being the most common version/allele in a population, being an ancestral allele, or being indentified first as a prototypical example of a gene.\n\nIn model organism datasets, 'reference' genes are typically the 'wild-type' allele for a given gene, representing a functional and unaltered version of the gene that is part of a defined genomic background, and against which natural or experimentally-induced versions are compared."
        ]
    },
    "query": "Get JSON for Class",
    "version": "c58c844",
    "parents": [],
    "relationships": [],
    "related_individuals": [],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
                    "Entity",
                    "Individual",
                    "pub"
                ],
                "short_form": "Unattributed",
                "unique_facets": [
                    "pub"
                ],
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
    ]
}