Datasets available on VFB

Here is a list of all available datasets available on Virtual Fly Brain (VFB).

Adult Brain fru clones (Cachero2010) [Cachero2010]

[confocal microscopy; adult brain template JFRC2; aDT-f_M clone of Cachero 2010; aIP-a_M clone of Cachero 2010; Adult Brain fru clones (Cachero2010); JRC2018Unisex; Cachero et al., 2010, Curr. Biol. 20(18): 1589–1601; pSG-d_M clone of Cachero 2010]

Adult VNC neuropils (Court2020) [Court2020]

[lower tectulum on adult VNC, JRC2018VU; adult prothoracic neuromere on adult VNC, JRC2018VU; JRC2018UnisexVNC; ITD haltere tract on adult VNC, JRC2018VU; computer graphic; Court et al., 2017; medial ventral association center on adult VNC, JRC2018VU; dorsal median tract on adult VNC, JRC2018VU; Adult VNC neuropils (Court2020)]

Adult VNS neuropils (Court2017) [Court2017]

[accessory prothoracic nerve on adult VNS template, Court2018; Adult VNS neuropils (Court2017); prothoracic leg nerve on adult VNS template, Court2018; adult VNS template - Court2018; computer graphic; adult accessory mesothoracic neuromere on adult VNS template, Court2018; accessory metathoracic nerve on adult VNS template, Court2018; Court et al., 2017; accessory mesothoracic nerve on adult VNS template, Court2018]

AMMC local and projection neurons (Matsuo2016) [Matsuo2016]

[Bi7; confocal microscopy; AMMC local and projection neurons (Matsuo2016); adult brain template JFRC2; Matsuo et al., 2016, J. Comp. Neurol. 524(6): 1099–1164; AMMC-A1; JRC2018Unisex; Bb4]

BrainName neuropils and tracts - Ito half-brain [BrainName_Ito_half_brain]

[wedge commissure on adult brain template Ito2014; computer graphic; superior medial protocerebrum on adult brain template Ito2014; epaulette on adult brain template Ito2014; adult antennal lobe on adult brain template Ito2014; medial cerebro-cervical fascicle on adult brain template Ito2014; BrainName neuropils and tracts - Ito half-brain; Ito et al., 2014, Neuron 81(4): 755–765]

BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya) [JenettShinomya_BrainName]

[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya); lateral horn on adult brain template JFRC2; superior neuropils on adult brain template JFRC2; computer graphic; central body on adult brain template JFRC2; pedunculus of adult mushroom body on adult brain template JFRC2; superior clamp on adult brain template JFRC2; Ito et al., 2014, Neuron 81(4): 755–765]

BrainTrap lines (Knowles-Barley2010) [Knowles_Barley2010]

[FBti0143529; confocal microscopy; adult brain template JFRC2; FBti0143647; FBti0143596; Knowles-Barley et al., 2010, Database (Oxford) 2010: baq005; JRC2018Unisex; BrainTrap lines (Knowles-Barley2010)]

central brain neurons by lineage, Lee2020 [Lee2020]

A catalogue of single neuron images covering 18 central brain lineages.

Comparative Connectomics Reveals How Partner Identity, Location, and Activity Specify Synaptic Connectivity in Drosophila (Valdes-Aleman et al. 2021) [Valdes_Aleman2021]

L1 EM reconstructed neurons from Valdes-Aleman et al. 2021

Dickson lab VT line collection - VDRC images [Dickson_VT]

[confocal microscopy; adult brain template JFRC2; Dickson lab VT line collection - VDRC images; VDRC_VT014966_LexAGAD_attP40_1; JRC2018Unisex; VDRC_VT019992_LexAGAD_attP2_2; Tirian & Dickson, 2017; VDRC_VT019746_GAL4_attP2_1]

Dickson lab VT lines - FlyLight/Janelia images (2017) [Dickson2017]

[confocal microscopy; adult brain template JFRC2; VDRC; VT012791 GAL4 in the Adult Brain Dickson2017; adult VNS template - Court2018; VT014430 GAL4 in the Adult VNC Dickson2017; JRC2018Unisex; Tirian & Dickson, 2017; VT017250 GAL4 in the Adult Brain Dickson2017; Dickson lab VT lines - FlyLight/Janelia images (2017)]

EM FAFB Baltruschat et al 2021 [Baltruschat2021]

FAFB EM reconstructed neurons from Baltruschat et al 2021

EM FAFB Bates and Schlegel et al 2020 [BatesSchlegel2020]

FAFB EM reconstructed neurons from Bates and Schlegel et al 2020

EM FAFB Coates et al 2020 [Coates2020]

FAFB EM reconstructed neurons from Coates et al 2020

EM FAFB Dolan and Belliart-Guerin et al. 2018 [Dolan2018]

FAFB EM reconstructed neurons from Dolan and Belliart-Guerin et al. 2018

EM FAFB Dolan et al. 2019 [FafbDolan2019]

FAFB EM reconstructed neurons from Dolan et al. 2019

EM FAFB Felsenberg et al. 2018 [Felsenberg2018]

FAFB EM reconstructed neurons from Felsenberg et al 2018

EM FAFB Hampel and Eichler et al 2020 [HampelEichler2020]

FAFB EM reconstructed neurons from Hampel and Eichler et al 2020

EM FAFB Kim et al 2020 [Kim2020]

FAFB EM reconstructed neurons from Kim et al 2020

EM FAFB Marin et al 2020 [Marin2020]

FAFB EM reconstructed neurons from Marin et al 2020

EM FAFB Morimoto et al 2020 [Morimoto2020]

FAFB EM reconstructed neurons from Morimoto et al 2020

EM FAFB Otto et al 2020 [Otto2020]

FAFB EM reconstructed neurons from Otto et al 2020

EM FAFB Sayin et al 2019 [Sayin2019]

FAFB EM reconstructed neurons from Sayin et al 2019

EM FAFB Turner-Evans et al 2020 [Turner_Evans2020]

FAFB EM reconstructed neurons from Turner-Evans et al 2020

EM FAFB Wang et al 2020a [Wang2020a]

FAFB EM reconstructed neurons from Wang et al 2020a

EM FAFB Wang et al 2020b [Wang2020b]

FAFB EM reconstructed neurons from Wang et al 2020b

EM FAFB Wang et al 2020c [Wang2020c]

FAFB EM reconstructed neurons from Wang et al 2020c

EM FAFB Zheng et al 2018 [Zheng2018]

FAFB EM reconstructed neurons from Zheng et al 2018

EM FAFB Zheng et al 2020 [Zheng2020]

FAFB EM reconstructed neurons from Zheng et al 2020

EM FANC Maniates-Selvin et al 2020 [Maniates_Selvin2020]

FANC EM reconstructed neurons from Maniates-Selvin et al 2020

EM L1 Andrade et al. 2019 [Andrade2019]

L1 EM reconstructed neurons from Andrade et al 2019

EM L1 Carreira-Rosario, Arzan Zarin, Clark et al. 2018 [CarreiraRosario2018]

L1 EM reconstructed neurons from Carreira-Rosario, Arzan Zarin, Clark et al. 2018

EM L1 Eschbach et al 2020 [Eschbach2020]

L1 EM reconstructed neurons from Eschbach et al 2020

EM L1 Eschbach et al 2020b [Eschbach2020b]

L1 EM reconstructed neurons from Eschbach et al 2020b

EM L1 Jovanic et al. 2019 [Jovanic2019]

L1 EM reconstructed neurons from Jovanic et al. 2019

EM L1 Mark et al. 2019 [Mark2019]

L1 EM reconstructed neurons from Mark et al. 2019

EM L1 Miroschnikow et al. 2018 [Miroschnikow2018]

L1 EM reconstructed neurons from Miroschnikow et al. 2018

EM L1 Tastekin et al 2018 [Tastekin2018]

L1 EM reconstructed neurons from Tastekin et al 2018

EM L1 Zarin, Mark et al. 2019 [Zarin2019]

L1 EM reconstructed neurons from Zarin, Mark et al. 2019

Eve+ neurons, sensorimotor circuit - EM (Heckscher2015) [Heckscher2015]

Heckscher et al. 2015

FlyCircuit 1.0 - single neurons (Chiang2010) [Chiang2010]

[confocal microscopy; adult brain template JFRC2; JRC2018Unisex; TH-M-300024; FlyCircuit 1.0 - single neurons (Chiang2010); VGlut-F-800195; Chiang et al., 2011, Curr. Biol. 21(1): 1–11; fru-M-300260]

FlyLight - Gen1 GAL4/LexA collection (exported 2019) [FlyLightGen1Set2019]

[confocal microscopy; Jenett et al., 2012, Cell Rep. 2(4): 991–1001; JRC_R77A11_GAL4_VNC_20100414; FlyLight - Gen1 GAL4/LexA collection (exported 2019); JRC_R81F04_GAL4_Brain_20101201; JRC_R64F03_GAL4_Brain_20100202; JRC2018UnisexVNC; JRC_R21F02_lexA_Brain_20110513; JRC2018Unisex; JRC_R32G08_GAL4_VNC_20090516]

FlyLight - GMR GAL4 collection (Jenett2012) [Jenett2012]

[JRC_R19E06 GAL4 in the adult brain; confocal microscopy; adult brain template JFRC2; Jenett et al., 2012, Cell Rep. 2(4): 991–1001; FlyLight - GMR GAL4 collection (Jenett2012); JRC2018Unisex; JRC_R9A09 GAL4 in the adult brain; JRC_R13F02 GAL4 in the adult brain]

FlyLight split-GAL4 lines for Lateral Horn [FlyLight2019LateralHorn2019]

FlyLight split-GAL4 lines for Lateral Horn from Dolan et al. 2019

FlyLight split-GAL4 lines for Lateral Horn [LateralHorn2019]

FlyLight split-GAL4 lines for Lateral Horn from Dolan et al. 2019

GAL4 Split expression patterns from Dolan et al. 2019 [Dolan2019]

GAL4 Split expression patterns from Dolan et al. 2019

Grooming neurons and drivers (Hampel 2015) [FlyLight2019Hampel2015]

Images of grooming neurons and split GAL4 line drivers.

Grooming neurons and drivers (Hampel 2015) [Hampel2015]

Images of grooming neurons and split GAL4 line drivers.

Ito lab adult brain lineage clone image set [Ito2013]

An exhaustive set of lineage clones covering the adult brain from Kei Ito’s lab.

JRC 2018 templates & ROIs [JRC2018]

JRC2018 templates with regions of interest painted by Kazunori Shinomiya

JRC_FlyEM_Hemibrain neurons Version 1.0.1 [Xu2020Neurons]

Version 1.0.1 of reconstruction JRC_FlyEM_Hemibrain neurons and their synaptic connectivity

JRC_FlyEM_Hemibrain neurons Version 1.1 [Xu2020NeuronsV1point1]

Version 1.1 of reconstruction JRC_FlyEM_Hemibrain neurons and their synaptic connectivity

JRC_FlyEM_Hemibrain painted domains [Xu2020roi]

Synapse segmentation and regions of interest on JRC_FlyEM_Hemibrain

L3 Larval CNS Template (Truman2016) [Truman2016]

Template image by James W. Truman and the Fly Light Project Team at HHMI Janelia Research Campus.

L3 neuropils (WoodHartenstein2018) [WoodHartenstein2018]

[L3 CNS template - Wood2018; left centrolateral neuropil of T1 on L3 CNS template, Wood2018; computer graphic; right centromedial neuropil of A1 on L3 CNS template, Wood2018; right ventrolateral neuropil of maxillary segment on L3 CNS template, Wood2018; L3 neuropils (WoodHartenstein2018); right centrolateral neuropil of A4 on L3 CNS template, Wood2018; right centromedial neuropil of T2 on L3 CNS template, Wood2018]

larval hugin neurons - EM (Schlegel2016) [Schlegel2016]

Schlegel et al. 2016

Larval MB neurons - EM (Eichler2017) [Eichler2017]

Eichler, Li, Litwin-Kumar et al. 2017

Larval motor circuit neurons (Zwart2016) [Zwart2016]

Zwart et al. 2016

Larval olfactory system neurons - EM (Berk2016) [Berck2016]

Berck, Khandelwal et al. 2016

Larval peristaltic locomotor system neurons - EM (Fushiki2016) [Fushiki2016]

Fushiki et al. 2016

larval sensorimotor decision pathways (Jovanic2016) [Jovanic2016]

Jovanic, Schneider-Mizell et al. 2016

larval visual circuit neurons (Larderet2017) [Larderet2017]

Larderet, Fritsch et al. 2017

Larval wave neurons and circuit partners - EM (Takagi2017) [Takagi2017]

Takagi et al. 2017

Lee lab adult brain lineage clone image set [Yu2013]

An exhaustive set of lineage clones covering the adult brain from Tzumin Lee’s lab.

LexA driver targetting mechanosensory eye bristles (Hampel2017) [Hampel2017]

Simultaneous activation of parallel sensory pathways promotes a grooming sequence in Drosophila

MBONs and split-GAL4 lines that target them (Aso2014) [Aso2014]

[confocal microscopy; adult brain template JFRC2; JRC_MB043B_VNC_2020__6; MBONs and split-GAL4 lines that target them (Aso2014); MBON-02 of Aso 2014; JRC_MB065B_VNC_2020__2; JRC2018UnisexVNC; Aso et al., 2014, eLife 3: e04577; JRC2018Unisex; JRC_MB047B_Brain_2020__5]

NBLAST clustering of FlyCircuit 1.0 neurons (Costa2016) [CostaJefferis_v3]

Version 3 NBLAST clustering of FlyCircuit 1.0 neurons

Neurons involved in courtship and song (Lillvis2018) [Lillvis2018]

single example of pIP10 neuron in adult CNS

Neurons involved in larval fast escape response - EM (Ohyama2016) [Ohyama2015]

Ohyama, Schneider-Mizell et al. 2015

Nociceptive circuit neurons - EM (Gerhard2017) [Gerhard2017]

Gerhard et al. 2017

Nociceptive system neurons - EM (Burgos2017) [Burgos2018]

Burgos et al 2018

Split GAL4 lines for dopaminergic neurons, Xie2018 [Xie2018]

[P{R55C10-GAL4.DBD} ∩ P{ple-p65.AD.TH-D} expression pattern of Xie2018; confocal microscopy; Split GAL4 lines for dopaminergic neurons, Xie2018; adult brain template JFRC2; P{R76F05-GAL4.DBD} ∩ P{ple-p65.AD.TH-F} expression pattern of Xie2018; Xie et al., 2018, Cell Rep. 23(2): 652–665; JRC2018Unisex; P{R55C10-GAL4.DBD} ∩ P{DAT-B-p65.AD} expression pattern of Xie2018]

split-GAL4 lines for EB neurons (Robie2017) [Robie2017]

split-GAL4 lines for Ellipsoid Body neurons from the (walking-more) brain-behavior map

split-GAL4 lines for descending neurons (Namiki2018) [FlyLight2019Namiki2018]

Descending sensory-motor pathways in adult CNS

split-GAL4 lines for descending neurons (Namiki2018) [Namiki2018]

Descending sensory-motor pathways in adult CNS

split-GAL4 lines for dopaminergic neurons (AsoRubin2016) [AsoRubin2016]

For comparison of the properties of memories formed by optogenetic activation of individual DAN cell types

split-GAL4 lines for dopaminergic neurons (AsoRubin2016) [FlyLight2019AsoRubin2016]

For comparison of the properties of memories formed by optogenetic activation of individual DAN cell types

split-GAL4 lines for EB neurons (Robie2017) [FlyLight2019Robie2017]

split-GAL4 lines for Ellipsoid Body neurons from the (walking-more) brain-behavior map

split-GAL4 lines for LC VPNs (Wu2016) [FlyLight2019Wu2016]

split-GAL4 lines for the Lobula Columnar (LC) visual projection neurons (LC Paper)

split-GAL4 lines for LC VPNs (Wu2016) [Wu2016]

split-GAL4 lines for the Lobula Columnar (LC) visual projection neurons (LC Paper)

Split-GAL4 lines from Davis et al., 2020 [SplitDavis2020]

Split-GAL4 lines from Davis et al 2020

Split-GAL4 lines from Giraldo et al., 2018 [SplitGiraldo2018]

Split-GAL4 lines from Giraldoet al 2018

Split-GAL4 lines from Klapoetke et al. 2017 [FlyLight2019Klapoetke2017]

Split-GAL4 lines used for the characterization of LPLC2 anatomy and function

Split-GAL4 lines from Klapoetke et al. 2017 [Klapoetke2017]

Split-GAL4 lines used for the characterization of LPLC2 anatomy and function

Split-GAL4 lines from McKellar et al., 2020 [McKellar2020]

Split-GAL4 lines labelling proboscis muscle motor neurons from McKellar et al 2020

Split-GAL4 lines from Nojima et al., 2021 [Nojima2021]

Split-GAL4 lines labelling doublesex-expressing single neuronal clusters or neurons in the brain of both males and females from Nojima et al, 2021

Split-GAL4 lines from Schretter et al., 2020 [SplitSchretter2020]

Split-GAL4 lines from Schretter et al 2020

Split-GAL4 lines from Turner-Evans et al., 2017 [SplitDavis2017]

Split-GAL4 lines from Davis et al 2017

Split-GAL4 lines from Turner-Evans et al., 2017 [SplitTurner_Evans2017]

Split-GAL4 lines from Turner_Evans et al 2017

Split-GAL4 lines from Turner-Evans et al., 2020 [SplitTurner_Evans2020]

Split-GAL4 lines from Turner_Evans et al 2020

Split-GAL4 lines from Wang et al., 2020a [SplitWang2020a]

Split-GAL4 lines from Wang et al 2020

Split-GAL4 lines from Wang et al., 2020b [SplitWang2020b]

Split-GAL4 lines from Wang et al 2020b

Splits targetting CX neurons, Wolff2018 [FlyLight2019Wolff2018]

[Splits targetting CX neurons, Wolff2018; JRC_SS00190_VNC_2020__1; confocal microscopy; JRC_SS50417_VNC_2020__1; JRC2018UnisexVNC; JRC_SS25983_Brain_2020__1; JRC_SS00098_VNC_2020__1; JRC_SS52267_Brain_2020__1; Wolff and Rubin, 2018, J. Comp. Neurol. 526(16): 2585–2611]

Splits targetting CX neurons, Wolff2018 [Wolff2018]

[Splits targetting CX neurons, Wolff2018; confocal microscopy; JRC_SS54295_Brain_2018_20180320_32_I2_20x; JRC_SS00081_Brain_2018_20160122_43_C5_20x; JRC2018Unisex; JRC_SS50417_Brain_2018_20180320_32_A3_20x; JRC_SS52577_Brain_2018_20180320_32_G2_20x; Wolff and Rubin, 2018, J. Comp. Neurol. 526(16): 2585–2611; JRC_SS25983_Brain_2018_20160212_44_C4_20x]

Splits targetting the visual motion pathway, Strother2017 [FlyLight2019Strother2017]

[confocal microscopy; JRC2018UnisexVNC; JRC_SS01603_VNC_2020__1; Splits targetting the visual motion pathway, Strother2017; JRC_SS02260_VNC_2020__1; JRC_SS01574_VNC_2020__1; JRC_SS00734_VNC_2020__1; JRC_SS01601_VNC_2020__1; Strother et al., 2017, Neuron 94(1): 168–182.e10]

Splits targetting the visual motion pathway, Strother2017 [Strother2017]

[Strother et al., 2017, Neuron 94(1): 168–182.e10; Splits targetting the visual motion pathway, Strother2017]

Third order olfactory neurons involved in pheromone response - backfills (Kohl2013) [Kohl2013]

[120816-JK56fill; confocal microscopy; adult brain template JFRC2; 121122-2JK1029fill; Kohl et al., 2013, Cell 155(7): 1610–1623; 120717-4JK1029fill; JRC2018Unisex; Third order olfactory neurons involved in pheromone response - backfills (Kohl2013)]

Truman Larval Flip-Out Collection [TrumanWood2018public]

Images by James W. Truman and the Fly Light Project Team at HHMI Janelia Research Campus.

Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in Drosophila (Hueckesfeld et al. 2020) [Hueckesfeld2020]

L1 EM reconstructed neurons from Hueckesfeld et al. 2020


Last modified January 5, 2022: adding Flybase terms (25b1e65)