qualified genomic feature set [GENO_0000715]
A set of qualified sequence features that carry genomic sequence. A ‘complement’ refers to an exhaustive collection of all objects that make up some well-defined set. This notion is useful for defining biologically-relevant sets of sequence features. For example, a haplotype is defined as the set of all genetically-linked alleles on a single chromosomal strand at a defined location - e.g. the SNP alleles {rs7412-C, rs429358-C} comprise the haplotype defining the APOEɛ4 gene allele. A complements may contain 0, 1, or more than one members. For example, the complement of alleles at a defined locus across homologous chromosomes in an individual’s genome will consist of two members for autosomal locations, and one member for non-homologous locations on the X and Y chromosome.
Note
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VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/GENO_0000715",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000715",
"label": "qualified genomic feature set"
},
"description": [
"A set of qualified sequence features that carry genomic sequence."
],
"comment": [
"A 'complement' refers to an exhaustive collection of all objects that make up some well-defined set. This notion is useful for defining biologically-relevant sets of sequence features. For example, a haplotype is defined as the set of all genetically-linked alleles on a single chromosomal strand at a defined location - e.g. the SNP alleles {rs7412-C, rs429358-C} comprise the haplotype defining the APOE\u025b4 gene allele.\n\nA complements may contain 0, 1, or more than one members. For example, the complement of alleles at a defined locus across homologous chromosomes in an individual's genome will consist of two members for autosomal locations, and one member for non-homologous locations on the X and Y chromosome."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GENO_0000920",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000920",
"label": "qualified sequence feature set"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GENO_0000897",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000897",
"label": "genomic entity"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/GENO_0000726",
"label": "has_sequence_feature",
"type": "has_sequence_feature"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GENO_0000660",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000660",
"label": "genomic feature set"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0002351",
"label": "has_member",
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},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GENO_0000714",
"types": [
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],
"short_form": "GENO_0000714",
"label": "qualified genomic feature"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
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