sequence_variation_affecting_transcript [SO_1000049]
Any change in mature, spliced and processed, RNA that results from a change in the corresponding DNA sequence. OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen sequence_variation_affecting_transcript in VFB
Term Information
- ID: SO_1000049
- Name: sequence_variation_affecting_transcript
- Definition: Any change in mature, spliced and processed, RNA that results from a change in the corresponding DNA sequence.
- Synonyms:
- Type:
- Comment: OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect.
VFB Term Json
{
"term": {
"core": {
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"symbol": "",
"types": [
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"Deprecated"
],
"short_form": "SO_1000049",
"unique_facets": [
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],
"label": "sequence_variation_affecting_transcript"
},
"description": [
"Any change in mature, spliced and processed, RNA that results from a change in the corresponding DNA sequence."
],
"comment": [
"OBSOLETE: This term was deleted as it conflated more than one term. The alteration is separate from the effect."
]
},
"query": "Get JSON for Class",
"version": "c58c844",
"parents": [],
"relationships": [],
"related_individuals": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/IAO_0100001",
"database_cross_reference": [],
"label": "term replaced by",
"type": "term_replaced_by",
"confidence_value": ""
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001576",
"types": [
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"Class",
"has_subClass"
],
"short_form": "SO_0001576",
"unique_facets": [
"Class"
],
"label": "transcript_variant"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "sequence variant causing partially characterised change in transcript",
"type": ""
},
"pub": {
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"DOI": ""
}
},
{
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"label": ""
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"DOI": ""
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},
{
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"label": ""
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},
{
"synonym": {
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"label": "sequence_variant_causing_uncharacterised_change_in_transcript",
"type": ""
},
"pub": {
"core": {
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"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"label": ""
},
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}
},
{
"synonym": {
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},
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"label": ""
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"PubMed": "",
"DOI": ""
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},
{
"synonym": {
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"label": "mutation affecting transcript",
"type": ""
},
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],
"short_form": "Unattributed",
"unique_facets": [
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],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "sequence variation affecting transcript",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"Individual",
"pub"
],
"short_form": "Unattributed",
"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_related_synonym",
"label": "mutation causing uncharacterised change in transcript",
"type": ""
},
"pub": {
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"types": [
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"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": []
}
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