genomic genotype (sex-qualified) [GENO_0000645]
A genomic genotype where the genomic background specifies a male or female sex chromosome complement. We distinguish the notion of a sex-agnostic intrinsic genotype, which does not specify whether the portion of the genome defining organismal sex is male or female, from the notion of a sex-qualified intrinsic genotype, which does. Male and female mice that contain the same background and genetic variation complement will have the same ‘sex-agnostic intrinsic genotype’, despite their genomes varying in their sex-chromosome complement. By contrast, these two mice would have different ‘sex-qualified intrinsic genotypes’, as this class takes background sex chromosome sequences into account in the identity criteria for its instances. Conceptually, a sex-qualified phenotype represents a superset of sequence features relative to a sex-agnostic intirnsic genotype, in that if specifies the background sex-chromosome complement of the genome.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen genomic genotype (sex-qualified) in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/GENO_0000645",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000645",
"label": "genomic genotype (sex-qualified)"
},
"description": [
"A genomic genotype where the genomic background specifies a male or female sex chromosome complement."
],
"comment": [
"We distinguish the notion of a sex-agnostic intrinsic genotype, which does not specify whether the portion of the genome defining organismal sex is male or female, from the notion of a sex-qualified intrinsic genotype, which does. Male and female mice that contain the same background and genetic variation complement will have the same 'sex-agnostic intrinsic genotype', despite their genomes varying in their sex-chromosome complement. By contrast, these two mice would have different 'sex-qualified intrinsic genotypes', as this class takes background sex chromosome sequences into account in the identity criteria for its instances.\n\nConceptually, a sex-qualified phenotype represents a superset of sequence features relative to a sex-agnostic intirnsic genotype, in that if specifies the background sex-chromosome complement of the genome."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GENO_0000899",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000899",
"label": "genomic genotype"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/GENO_0000650",
"label": "has_sex_agnostic_part",
"type": "has_sex_agnostic_part"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GENO_0000000",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000000",
"label": "genomic genotype (sex-agnostic)"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
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