intergenic_1kb_variant [SO_0002074]
A variant that falls in an intergenic region that is 1 kb or less between 2 genes. This term is added to map to the Annovar annotation ‘upstream,downstream’ .
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen intergenic_1kb_variant in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/SO_0002074",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0002074",
"label": "intergenic_1kb_variant"
},
"description": [
"A variant that falls in an intergenic region that is 1 kb or less between 2 genes."
],
"comment": [
"This term is added to map to the Annovar annotation 'upstream,downstream' ."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001628",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0001628",
"label": "intergenic_variant"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "ANNOVAR:upstream;downstream",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
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