upstream_gene_variant SO_0001631
upstream_gene_variant
ID: SO_0001631
Class
A sequence variant located 5' of a gene.
Different groups annotate up and downstream to different lengths. The subtypes are specific and are backed up with cross references.
Open in VFB 3D Browser →Classification
Alternative Names
| Synonym | Scope | Reference |
|---|---|---|
| ANNOVAR:upstream | related synonym | //www.openbioinformatics.org/annovar/annovar_download.html, VAR |
| Jannovar:upstream_gene_variant | exact synonym | //doc-openbio.readthedocs.org/projects/jannovar/en/master/var_effects.html |
| upstream gene variant | exact synonym | |
| VEP:upstream_gene_variant | exact synonym | VAR |
| snpEff:UPSTREAM | exact synonym | VAR |