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Common Anatomy Reference Ontology (CARO)
An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species.
- 1: acellular anatomical structure [CARO_0000040]
- 2: acellular anatomical structure [CARO_0000040]
- 3: anatomical boundary [CARO_0000010]
- 4: anatomical entity [CARO_0000000]
- 5: anatomical entity [CARO_0000000]
- 6: anatomical space [CARO_0000005]
- 7: biological entity [CARO_0030000]
- 8: biological entity [CARO_0030000]
- 9: cell [CARO_0000013]
- 10: cell [CARO_0000013]
- 11: cell part [CARO_0000014]
- 12: cell part [CARO_0000014]
- 13: cell space [CARO_0000062]
- 14: cellular anatomical structure [CARO_0020003]
- 15: cellular anatomical structure [CARO_0020003]
- 16: cellular organism [CARO_0010004]
- 17: cellular organism [CARO_0010004]
- 18: connected anatomical structure [CARO_0000003]
- 19: connected anatomical structure [CARO_0000003]
- 20: connected anatomical system [CARO_0000011]
- 21: disconnected anatomical group [CARO_0020000]
- 22: disconnected anatomical group [CARO_0020000]
- 23: expression pattern [CARO_0030002]
- 24: expression pattern [CARO_0030002]
- 25: extraembryonic structure [CARO_0000042]
- 26: extraembryonic structure [CARO_0000042]
- 27: gross anatomical part [CARO_0001008]
- 28: gross anatomical part [CARO_0001008]
- 29: immaterial anatomical entity [CARO_0000007]
- 30: immaterial anatomical entity [CARO_0000007]
- 31: material anatomical entity [CARO_0000006]
- 32: material anatomical entity [CARO_0000006]
- 33: multi-cell-part structure [CARO_0001000]
- 34: multi-cell-part structure [CARO_0001000]
- 35: multicellular anatomical structure [CARO_0010000]
- 36: multicellular anatomical structure [CARO_0010000]
- 37: multicellular organism [CARO_0000012]
- 38: multicellular organism [CARO_0000012]
- 39: neuron projection bundle [CARO_0001001]
- 40: neuron projection bundle [CARO_0001001]
- 41: organism [CARO_0001010]
- 42: organism or virus or viroid [CARO_0001010]
- 43: organism subdivision [CARO_0000032]
- 44: organism subdivision [CARO_0000032]
- 45: organism substance [CARO_0000004]
- 46: organism substance [CARO_0000004]
1 - acellular anatomical structure [CARO_0000040]
An anatomical structure that has no cells or cell parts as a part. Example. Insect cuticle, eggshell, hair.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen acellular anatomical structure in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000040",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000040",
"label": "acellular anatomical structure"
},
"description": [
"An anatomical structure that has no cells or cell parts as a part."
],
"comment": [
"Example. Insect cuticle, eggshell, hair."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000003",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000003",
"label": "connected anatomical structure"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001008",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001008",
"label": "gross anatomical part"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
2 - acellular anatomical structure [CARO_0000040]
An anatomical structure that has no cells or cell parts as a part.
acellular anatomical structure
ID: CARO_0000040
Anatomy
An anatomical structure that has no cells or cell parts as a part.
Example. Insect cuticle, eggshell, hair.
Open in VFB 3D Browser →Classification
3 - anatomical boundary [CARO_0000010]
A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures. Except in the case of abstracted fiat boundaries such as the midline plane of an organism, all 2D anatomical entities have a 3 dimensional projection. For example, the surface of the shell of a muscle has a distinct shape that projects into the third dimension. Note that boundaries are 2D structures. They have no thickness - and so can not be sites of gene expression or gene product localisation. For this, use boundary region terms.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen anatomical boundary in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000010",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000010",
"label": "anatomical boundary"
},
"description": [
"A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures."
],
"comment": [
"Except in the case of abstracted fiat boundaries such as the midline plane of an organism, all 2D anatomical entities have a 3 dimensional projection. For example, the surface of the shell of a muscle has a distinct shape that projects into the third dimension. Note that boundaries are 2D structures. They have no thickness - and so can not be sites of gene expression or gene product localisation. For this, use boundary region terms."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/BFO_0000009",
"types": [
"Entity",
"Class"
],
"short_form": "BFO_0000009",
"label": "BFO_0000009"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000007",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000007",
"label": "immaterial anatomical entity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
4 - anatomical entity [CARO_0000000]
A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach). The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerExample Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000000",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0000000",
"label": "anatomical entity"
},
"description": [
"A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex."
],
"comment": [
"Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach). The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0030000",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0030000",
"label": "biological entity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00104646",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00104646",
"label": "intermediate tectulum on adult VNC, JRC2018VU"
},
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"short_form": "VFBc_00200000",
"label": "JRC2018UnisexVNC_c"
},
"index": [
14
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00200000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00200000",
"label": "JRC2018UnisexVNC"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4646/VFB_00200000/"
},
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"iri": "http://virtualflybrain.org/reports/VFBc_00104644",
"types": [
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"label": "intermediate tectulum on adult VNC, JRC2018VU_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00104651",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00104651",
"label": "neck tectulum on adult VNC, JRC2018VU"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00200000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00200000",
"label": "JRC2018UnisexVNC_c"
},
"index": [
19
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00200000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00200000",
"label": "JRC2018UnisexVNC"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4651/VFB_00200000/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00104649",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00104649",
"label": "neck tectulum on adult VNC, JRC2018VU_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00030875",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"VFB",
"has_image"
],
"short_form": "VFB_00030875",
"label": "lobe system of adult mushroom body on adult brain template JFRC2"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017894",
"types": [
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"Individual",
"Template",
"VFB"
],
"short_form": "VFBc_00017894",
"label": "JFRC2_template_c"
},
"index": [
112
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017894",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Template",
"VFB",
"has_image"
],
"short_form": "VFB_00017894",
"label": "adult brain template JFRC2"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0003/0875/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00030875",
"types": [
"Entity",
"Individual",
"VFB"
],
"short_form": "VFBc_00030875",
"label": "MB_L - painted domain JFRC2_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100020",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00100020",
"label": "adult accessory mesothoracic neuromere on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
20
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0020/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100020",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100020",
"label": "adult accessory mesothoracic neuromere on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00104644",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00104644",
"label": "adult accessory mesothoracic neuromere on adult VNC, JRC2018VU"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00200000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00200000",
"label": "JRC2018UnisexVNC_c"
},
"index": [
12
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00200000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00200000",
"label": "JRC2018UnisexVNC"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4644/VFB_00200000/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00104642",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00104642",
"label": "adult accessory mesothoracic neuromere on adult VNC, JRC2018VU_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
}
],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
5 - anatomical entity [CARO_0000000]
A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.
anatomical entity
ID: CARO_0000000
Class
A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.
Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach). The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure.
Open in VFB 3D Browser →Classification
Downloads
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
6 - anatomical space [CARO_0000005]
An Immaterial anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes and that is bounded by an anatomical surface. Original definition: “Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.” The last clause. “contains one or more organism substances or anatomical structures” was dropped from the definition because it was an unnecessary restriction.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerTerm Information
- ID: CARO_0000005
- Name: anatomical space
- Definition: An Immaterial anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes and that is bounded by an anatomical surface.
- Synonyms:
- Type:
- Comment: Original definition: “Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.” The last clause. “contains one or more organism substances or anatomical structures” was dropped from the definition because it was an unnecessary restriction.
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000005",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000005",
"unique_facets": [
"Anatomy"
],
"label": "anatomical space"
},
"description": [
"An Immaterial anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes and that is bounded by an anatomical surface."
],
"comment": [
"Original definition: \"Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures.\" The last clause. \"contains one or more organism substances or anatomical structures\" was dropped from the definition because it was an unnecessary restriction."
]
},
"query": "Get JSON for Class",
"version": "3b19da3",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000007",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000007",
"unique_facets": [
"Anatomy"
],
"label": "immaterial anatomical entity"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/BFO_0000029",
"types": [
"Entity",
"Class"
],
"short_form": "BFO_0000029",
"unique_facets": [
"Class"
],
"label": "site"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/BFO_0000050",
"label": "is part of",
"type": "part_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001010",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0001010",
"unique_facets": [
"Class"
],
"label": "organism"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
7 - biological entity [CARO_0030000]
Entity that is, is part of, or derived from an organism, virus, or viroid or a collection of them. Important for alignment with Darwin Core class “Organism”.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerExample Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0030000",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0030000",
"label": "biological entity"
},
"description": [
"Entity that is, is part of, or derived from an organism, virus, or viroid or a collection of them."
],
"comment": [
"Important for alignment with Darwin Core class \"Organism\"."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/BFO_0000004",
"types": [
"Entity",
"Class"
],
"short_form": "BFO_0000004",
"label": "independent continuant"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/BFO_0000050",
"label": "is part of",
"type": "part_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0010004",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0010004",
"label": "cellular organism"
}
}
],
"xrefs": [],
"anatomy_channel_image": [
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00104646",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00104646",
"label": "intermediate tectulum on adult VNC, JRC2018VU"
},
"channel_image": {
"image": {
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00200000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00200000",
"label": "JRC2018UnisexVNC_c"
},
"index": [
14
],
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00200000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00200000",
"label": "JRC2018UnisexVNC"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4646/VFB_00200000/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00104644",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00104644",
"label": "intermediate tectulum on adult VNC, JRC2018VU_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00104651",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00104651",
"label": "neck tectulum on adult VNC, JRC2018VU"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00200000",
"types": [
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"Individual",
"Template"
],
"short_form": "VFBc_00200000",
"label": "JRC2018UnisexVNC_c"
},
"index": [
19
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00200000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00200000",
"label": "JRC2018UnisexVNC"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4651/VFB_00200000/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00104649",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00104649",
"label": "neck tectulum on adult VNC, JRC2018VU_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00030875",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"VFB",
"has_image"
],
"short_form": "VFB_00030875",
"label": "lobe system of adult mushroom body on adult brain template JFRC2"
},
"channel_image": {
"image": {
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017894",
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],
"short_form": "VFBc_00017894",
"label": "JFRC2_template_c"
},
"index": [
112
],
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017894",
"types": [
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"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Template",
"VFB",
"has_image"
],
"short_form": "VFB_00017894",
"label": "adult brain template JFRC2"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0003/0875/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00030875",
"types": [
"Entity",
"Individual",
"VFB"
],
"short_form": "VFBc_00030875",
"label": "MB_L - painted domain JFRC2_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100020",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00100020",
"label": "adult accessory mesothoracic neuromere on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
20
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
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"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0020/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100020",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100020",
"label": "adult accessory mesothoracic neuromere on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00104644",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_domain",
"has_image"
],
"short_form": "VFB_00104644",
"label": "adult accessory mesothoracic neuromere on adult VNC, JRC2018VU"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00200000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00200000",
"label": "JRC2018UnisexVNC_c"
},
"index": [
12
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00200000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00200000",
"label": "JRC2018UnisexVNC"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/4644/VFB_00200000/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00104642",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00104642",
"label": "adult accessory mesothoracic neuromere on adult VNC, JRC2018VU_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
}
],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
8 - biological entity [CARO_0030000]
Entity that is, is part of, or derived from an organism, virus, or viroid or a collection of them.
biological entity
ID: CARO_0030000
Class
Entity that is, is part of, or derived from an organism, virus, or viroid or a collection of them.
Important for alignment with Darwin Core class "Organism".
Open in VFB 3D Browser →Classification
Downloads
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
9 - cell [CARO_0000013]
An anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. deprecate and replace with CL or GO term?
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000013",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000013",
"label": "cell"
},
"description": [
"An anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane."
],
"comment": [
"deprecate and replace with CL or GO term?"
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0020003",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0020003",
"label": "cellular anatomical structure"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GO_0005623",
"types": [
"Entity",
"Anatomy",
"Class",
"Deprecated"
],
"short_form": "GO_0005623",
"label": "obsolete cell"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CL_0000003",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CL_0000003",
"label": "native cell"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
10 - cell [CARO_0000013]
An anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
cell
ID: CARO_0000013
Anatomy
An anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
deprecate and replace with CL or GO term?
Open in VFB 3D Browser →Classification
11 - cell part [CARO_0000014]
Anatomical structure that is part of a cell and that has a granularity level equal to that of a protein complex or higher. This is declared equivalent with GO:0044464. The definition should be co-ordinated with GO. We could obsolete the CARO class and just use the GO class.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000014",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0000014",
"label": "cell part"
},
"description": [
"Anatomical structure that is part of a cell and that has a granularity level equal to that of a protein complex or higher."
],
"comment": [
"This is declared equivalent with GO:0044464. The definition should be co-ordinated with GO. We could obsolete the CARO class and just use the GO class."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GO_0044464",
"types": [
"Entity",
"Class",
"Deprecated"
],
"short_form": "GO_0044464",
"label": "obsolete cell part"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
12 - cell part [CARO_0000014]
Anatomical structure that is part of a cell and that has a granularity level equal to that of a protein complex or higher.
cell part
ID: CARO_0000014
Anatomy
Anatomical structure that is part of a cell and that has a granularity level equal to that of a protein complex or higher.
This is declared equivalent with GO:0044464. The definition should be co-ordinated with GO. We could obsolete the CARO class and just use the GO class.
Open in VFB 3D Browser →Classification
Relationships
- is part of: cell
13 - cell space [CARO_0000062]
Anatomical space that is part of a cell.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerTerm Information
- ID: CARO_0000062
- Name: cell space
- Definition: Anatomical space that is part of a cell.
- Synonyms:
- Type:
- Comment:
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000062",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000062",
"unique_facets": [
"Anatomy"
],
"label": "cell space"
},
"description": [
"Anatomical space that is part of a cell."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "3b19da3",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000005",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000005",
"unique_facets": [
"Anatomy"
],
"label": "anatomical space"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/BFO_0000050",
"label": "is part of",
"type": "part_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000013",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000013",
"unique_facets": [
"Anatomy"
],
"label": "cell"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"unique_facets": [
"pub"
],
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
14 - cellular anatomical structure [CARO_0020003]
An anatomical structure consisting of one or more cells.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen cellular anatomical structure in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0020003",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0020003",
"label": "cellular anatomical structure"
},
"description": [
"An anatomical structure consisting of one or more cells."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000006",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000006",
"label": "material anatomical entity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
15 - cellular anatomical structure [CARO_0020003]
An anatomical structure consisting of one or more cells.
cellular anatomical structure
ID: CARO_0020003
Anatomy
An anatomical structure consisting of one or more cells.
Open in VFB 3D Browser →Classification
Downloads
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
16 - cellular organism [CARO_0010004]
An individual member of a clade of cellular organisms. A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of ‘anatomical structure’, meaning that an organism must be a connected structure. So, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms. A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of ‘anatomical structure’, meaning that an organism must be a connected structure. For example, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0010004",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0010004",
"label": "cellular organism"
},
"description": [
"An individual member of a clade of cellular organisms."
],
"comment": [
"A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. So, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms.",
"A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. For example, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/NCBITaxon_131567",
"types": [
"Entity",
"Class"
],
"short_form": "NCBITaxon_131567",
"label": "cellular organisms"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001010",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0001010",
"label": "organism or virus or viroid"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
17 - cellular organism [CARO_0010004]
An individual member of a clade of cellular organisms.
cellular organism
ID: CARO_0010004
Anatomy
An individual member of a clade of cellular organisms.
A general term for organism that is agnostic about single cell vs multi-cellular. Note that this is a subclass of 'anatomical structure', meaning that an organism must be a connected structure. For example, if I take one plant and make a rooted cutting from a it, I now have two (clonally related) organisms.
Open in VFB 3D Browser →Classification
18 - connected anatomical structure [CARO_0000003]
Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism’s own genome. Note that the definition does not say ‘generated exclusively by the co-ordinated expression of the organism’s own genome’, so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen connected anatomical structure in VFB
Example Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000003",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000003",
"label": "connected anatomical structure"
},
"description": [
"Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome."
],
"comment": [
"Note that the definition does not say 'generated exclusively by the co-ordinated expression of the organism's own genome', so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000006",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000006",
"label": "material anatomical entity"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0000053",
"label": "bearer of",
"type": "bearer_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/PATO_0002266",
"types": [
"Entity",
"Class"
],
"short_form": "PATO_0002266",
"label": "3-D shape"
}
},
{
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},
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"symbol": "",
"iri": "http://purl.obolibrary.org/obo/PATO_0010000",
"types": [
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],
"short_form": "PATO_0010000",
"label": "maximally connected"
}
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],
"xrefs": [],
"anatomy_channel_image": [
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},
{
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"short_form": "VFB_00030796",
"label": "antennal mechanosensory and motor center on adult brain template Ito2014"
},
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"short_form": "VFBc_00030796",
"label": "AMMC_AN - painted domain, BrainName pub_c"
},
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},
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"short_form": "VFB_00101457",
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"label": "AMMCon JRC_FlyEM_Hemibrain_c"
},
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},
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"short_form": "VFB_00102273",
"label": "AMMC on JRC2018Unisex adult brain"
},
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],
"short_form": "VFB_00101567",
"label": "JRC2018Unisex"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/"
},
"channel": {
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"iri": "http://virtualflybrain.org/reports/VFBc_00102273",
"types": [
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],
"short_form": "VFBc_00102273",
"label": "AMMC on JRC2018Unisex adult brain_c"
},
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"label": "computer graphic"
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},
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"types": [
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"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018"
},
"channel_image": {
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"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
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],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0016/"
},
"channel": {
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"iri": "http://virtualflybrain.org/reports/VFBc_00100016",
"types": [
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],
"short_form": "VFBc_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
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"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
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],
"short_form": "FBbi_00000224",
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}
}
}
],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
19 - connected anatomical structure [CARO_0000003]
Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism’s own genome.
connected anatomical structure
ID: CARO_0000003
Anatomy
Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome.
Note that the definition does not say 'generated exclusively by the co-ordinated expression of the organism's own genome', so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development.
Open in VFB 3D Browser →Classification
Relationships
- bearer of: 3-D shape, maximally connected
Downloads
Image files aligned to ventral median tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ITD haltere tract on adult VNC, JRC2018VU:
Image files aligned to ITD haltere chiasma on adult VNC, JRC2018VU:
Image files aligned to commissure of Fine Fibers of the ITD on adult VNC, JRC2018VU:
Image files aligned to intermediate tract of dorsal cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ventral lateral tract on adult VNC, JRC2018VU:
Image files aligned to median dorsal abdominal tract on adult VNC, JRC2018VU:
Image files aligned to dorsal median tract on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract on adult VNC, JRC2018VU:
20 - connected anatomical system [CARO_0000011]
[connected anatomical system; multicellular anatomical structure]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen connected anatomical system in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000011",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000011",
"label": "connected anatomical system"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0010000",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0010000",
"label": "multicellular anatomical structure"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/RO_0002577",
"types": [
"Entity",
"Class"
],
"short_form": "RO_0002577",
"label": "system"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": []
}
21 - disconnected anatomical group [CARO_0020000]
Material anatomical entity consisting of multiple anatomical structures that are not connected to each other.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen disconnected anatomical group in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0020000",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0020000",
"label": "disconnected anatomical group"
},
"description": [
"Material anatomical entity consisting of multiple anatomical structures that are not connected to each other."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000006",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000006",
"label": "material anatomical entity"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0002180",
"label": "has component",
"type": "has_component"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000003",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000003",
"label": "connected anatomical structure"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0000053",
"label": "bearer of",
"type": "bearer_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/PATO_0010001",
"types": [
"Entity",
"Class"
],
"short_form": "PATO_0010001",
"label": "disconnected"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
22 - disconnected anatomical group [CARO_0020000]
Material anatomical entity consisting of multiple anatomical structures that are not connected to each other.
disconnected anatomical group
ID: CARO_0020000
Anatomy
Material anatomical entity consisting of multiple anatomical structures that are not connected to each other.
Open in VFB 3D Browser →Classification
Relationships
- bearer of: disconnected
- has component: connected anatomical structure
23 - expression pattern [CARO_0030002]
[confocal microscopy; VDRC_VT048834_LexAGAD_attP40_2; VDRC_VT911043_GAL4_attP2_4; JRC2018Unisex; expression pattern; VDRC_VT039576_LexAGAD_attP40_1; adult brain template JFRC2; anatomical entity]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen expression pattern in VFB
Example Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0030002",
"symbol": "",
"types": [
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"Anatomy",
"Class"
],
"short_form": "CARO_0030002",
"label": "expression pattern"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_10000000",
"types": [
"Entity",
"Anatomy",
"Class",
"preferred_root"
],
"short_form": "FBbt_10000000",
"label": "anatomical entity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [
{
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00041691",
"types": [
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"Adult",
"Anatomy",
"Expression_pattern",
"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00041691",
"label": "VDRC_VT039576_LexAGAD_attP40_1"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00101567",
"types": [
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"Template"
],
"short_form": "VFBc_00101567",
"label": "JRC2018Unisex_c"
},
"index": [],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00101567",
"types": [
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"Adult",
"Anatomy",
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"Nervous_system",
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],
"short_form": "VFB_00101567",
"label": "JRC2018Unisex"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0004/1691/VFB_00101567/"
},
"channel": {
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"iri": "http://virtualflybrain.org/reports/VFBc_00041691",
"types": [
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"VFB"
],
"short_form": "VFBc_00041691",
"label": "VDRC_VT039576_LexAGAD_attP40_1_c"
},
"imaging_technique": {
"symbol": "Confocal",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000251",
"types": [
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],
"short_form": "FBbi_00000251",
"label": "confocal microscopy"
}
}
},
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"types": [
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],
"short_form": "VFB_00041691",
"label": "VDRC_VT039576_LexAGAD_attP40_1"
},
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"iri": "http://virtualflybrain.org/reports/VFBc_00017894",
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],
"short_form": "VFBc_00017894",
"label": "JFRC2_template_c"
},
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"template_anatomy": {
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"iri": "http://virtualflybrain.org/reports/VFB_00017894",
"types": [
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"Anatomy",
"Individual",
"Nervous_system",
"Template",
"VFB",
"has_image"
],
"short_form": "VFB_00017894",
"label": "adult brain template JFRC2"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0004/1691/"
},
"channel": {
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"iri": "http://virtualflybrain.org/reports/VFBc_00041691",
"types": [
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],
"short_form": "VFBc_00041691",
"label": "VDRC_VT039576_LexAGAD_attP40_1_c"
},
"imaging_technique": {
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"iri": "http://purl.obolibrary.org/obo/FBbi_00000251",
"types": [
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],
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"label": "confocal microscopy"
}
}
},
{
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"types": [
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"VFB",
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],
"short_form": "VFB_00044980",
"label": "VDRC_VT048834_LexAGAD_attP40_2"
},
"channel_image": {
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"types": [
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],
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"label": "JRC2018Unisex_c"
},
"index": [],
"template_anatomy": {
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"iri": "http://virtualflybrain.org/reports/VFB_00101567",
"types": [
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"Adult",
"Anatomy",
"Individual",
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"Template",
"has_image"
],
"short_form": "VFB_00101567",
"label": "JRC2018Unisex"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0004/4980/VFB_00101567/"
},
"channel": {
"symbol": "",
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"types": [
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],
"short_form": "VFBc_00044980",
"label": "VDRC_VT048834_LexAGAD_attP40_2_c"
},
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"iri": "http://purl.obolibrary.org/obo/FBbi_00000251",
"types": [
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"label": "confocal microscopy"
}
}
},
{
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"iri": "http://virtualflybrain.org/reports/VFB_00044980",
"types": [
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"Anatomy",
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"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00044980",
"label": "VDRC_VT048834_LexAGAD_attP40_2"
},
"channel_image": {
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"iri": "http://virtualflybrain.org/reports/VFBc_00017894",
"types": [
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],
"short_form": "VFBc_00017894",
"label": "JFRC2_template_c"
},
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"iri": "http://virtualflybrain.org/reports/VFB_00017894",
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"VFB",
"has_image"
],
"short_form": "VFB_00017894",
"label": "adult brain template JFRC2"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0004/4980/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00044980",
"types": [
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"VFB"
],
"short_form": "VFBc_00044980",
"label": "VDRC_VT048834_LexAGAD_attP40_2_c"
},
"imaging_technique": {
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"iri": "http://purl.obolibrary.org/obo/FBbi_00000251",
"types": [
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],
"short_form": "FBbi_00000251",
"label": "confocal microscopy"
}
}
},
{
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"iri": "http://virtualflybrain.org/reports/VFB_00048495",
"types": [
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"Adult",
"Anatomy",
"Expression_pattern",
"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00048495",
"label": "VDRC_VT911043_GAL4_attP2_4"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00101567",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00101567",
"label": "JRC2018Unisex_c"
},
"index": [],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00101567",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00101567",
"label": "JRC2018Unisex"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0004/8495/VFB_00101567/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00048495",
"types": [
"Entity",
"Individual",
"VFB"
],
"short_form": "VFBc_00048495",
"label": "VDRC_VT911043_GAL4_attP2_4_c"
},
"imaging_technique": {
"symbol": "Confocal",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000251",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000251",
"label": "confocal microscopy"
}
}
}
],
"pub_syn": [],
"def_pubs": []
}
24 - expression pattern [CARO_0030002]
The mereological sum of all cells in a single organism in which expression of some specified gene occurs.
expression pattern
ID: CARO_0030002
Anatomy
The mereological sum of all cells in a single organism in which expression of some specified gene occurs.
Open in VFB 3D Browser →Classification
Relationships
- has part: cell
Downloads
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
25 - extraembryonic structure [CARO_0000042]
A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis. MH: define as not part of embryo, or will not develop into embryo? MH: changed def to exclude cells so this class could be included in gross anatomical part. DOS: Changed to something that I think works for both vertebrates and invertebrates and that keeps the restriction to multicellular structures. Old def: “Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue that will not contribute to the embryo.”. One remaining question - perhaps zygote is too restrictive given that some organisms have parthenogenesis e.g. aphids?
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen extraembryonic structure in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000042",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000042",
"label": "extraembryonic structure"
},
"description": [
"A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis."
],
"comment": [
"MH: define as not part of embryo, or will not develop into embryo? MH: changed def to exclude cells so this class could be included in gross anatomical part. DOS: Changed to something that I think works for both vertebrates and invertebrates and that keeps the restriction to multicellular structures. Old def: \"Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue that will not contribute to the embryo.\". One remaining question - perhaps zygote is too restrictive given that some organisms have parthenogenesis e.g. aphids?"
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001008",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001008",
"label": "gross anatomical part"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000003",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000003",
"label": "connected anatomical structure"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
26 - extraembryonic structure [CARO_0000042]
A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis.
extraembryonic structure
ID: CARO_0000042
Anatomy
A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis.
MH: define as not part of embryo, or will not develop into embryo? MH: changed def to exclude cells so this class could be included in gross anatomical part. DOS: Changed to something that I think works for both vertebrates and invertebrates and that keeps the restriction to multicellular structures. Old def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue that will not contribute to the embryo.". One remaining question - perhaps zygote is too restrictive given that some organisms have parthenogenesis e.g. aphids?
Open in VFB 3D Browser →Classification
27 - gross anatomical part [CARO_0001008]
Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen gross anatomical part in VFB
Example Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0001008",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001008",
"label": "gross anatomical part"
},
"description": [
"Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells. "
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000006",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000006",
"label": "material anatomical entity"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/BFO_0000050",
"label": "is part of",
"type": "part_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000012",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0000012",
"label": "multicellular organism"
}
}
],
"xrefs": [],
"anatomy_channel_image": [
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100016",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
16
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
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"Adult",
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"Nervous_system",
"Template",
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],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0016/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100016",
"types": [
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],
"short_form": "VFBc_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
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],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100015",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100015",
"label": "accessory prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
15
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0015/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100015",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100015",
"label": "accessory prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100022",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100022",
"label": "ventral prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
29
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
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"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0022/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100022",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100022",
"label": "ventral prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100014",
"types": [
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"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100014",
"label": "dorsal prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
14
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0014/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100014",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100014",
"label": "dorsal prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100018",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100018",
"label": "accessory mesothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
18
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0018/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100018",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100018",
"label": "accessory mesothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
}
],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
28 - gross anatomical part [CARO_0001008]
Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells.
gross anatomical part
ID: CARO_0001008
Anatomy
Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells.
Open in VFB 3D Browser →Classification
Relationships
- is part of: multicellular organism
Downloads
Image files aligned to ventral median tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ITD haltere tract on adult VNC, JRC2018VU:
Image files aligned to ITD haltere chiasma on adult VNC, JRC2018VU:
Image files aligned to commissure of Fine Fibers of the ITD on adult VNC, JRC2018VU:
Image files aligned to intermediate tract of dorsal cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ventral lateral tract on adult VNC, JRC2018VU:
Image files aligned to median dorsal abdominal tract on adult VNC, JRC2018VU:
Image files aligned to dorsal median tract on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract on adult VNC, JRC2018VU:
29 - immaterial anatomical entity [CARO_0000007]
Anatomical entity that has no mass.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen immaterial anatomical entity in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000007",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000007",
"label": "immaterial anatomical entity"
},
"description": [
"Anatomical entity that has no mass."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000000",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0000000",
"label": "anatomical entity"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/BFO_0000141",
"types": [
"Entity",
"Class"
],
"short_form": "BFO_0000141",
"label": "immaterial entity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
30 - immaterial anatomical entity [CARO_0000007]
Anatomical entity that has no mass.
immaterial anatomical entity
ID: CARO_0000007
Anatomy
Anatomical entity that has no mass.
Open in VFB 3D Browser →Classification
31 - material anatomical entity [CARO_0000006]
An anatomical entity that has mass.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen material anatomical entity in VFB
Example Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000006",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000006",
"label": "material anatomical entity"
},
"description": [
"An anatomical entity that has mass."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/BFO_0000040",
"types": [
"Entity",
"Class"
],
"short_form": "BFO_0000040",
"label": "material entity"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000000",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0000000",
"label": "anatomical entity"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0000053",
"label": "bearer of",
"type": "bearer_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/PATO_0000125",
"types": [
"Entity",
"Class"
],
"short_form": "PATO_0000125",
"label": "mass"
}
}
],
"xrefs": [],
"anatomy_channel_image": [
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017680",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cluster",
"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00017680",
"label": "cluster 3.53"
},
"channel_image": {
"image": {
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00101567",
"types": [
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"Template"
],
"short_form": "VFBc_00101567",
"label": "JRC2018Unisex_c"
},
"index": [],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00101567",
"types": [
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"Adult",
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"Template",
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],
"short_form": "VFB_00101567",
"label": "JRC2018Unisex"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0001/7680/VFB_00101567/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017680",
"types": [
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],
"short_form": "VFBc_00017680",
"label": "cluster 3.53_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
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],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017680",
"types": [
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"Adult",
"Anatomy",
"Cluster",
"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00017680",
"label": "cluster 3.53"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017894",
"types": [
"Entity",
"Individual",
"Template",
"VFB"
],
"short_form": "VFBc_00017894",
"label": "JFRC2_template_c"
},
"index": [],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017894",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Template",
"VFB",
"has_image"
],
"short_form": "VFB_00017894",
"label": "adult brain template JFRC2"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0001/7680/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017680",
"types": [
"Entity",
"Individual",
"VFB"
],
"short_form": "VFBc_00017680",
"label": "cluster 3.53_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017233",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cluster",
"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00017233",
"label": "cluster 3.500"
},
"channel_image": {
"image": {
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017894",
"types": [
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"Individual",
"Template",
"VFB"
],
"short_form": "VFBc_00017894",
"label": "JFRC2_template_c"
},
"index": [],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017894",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Template",
"VFB",
"has_image"
],
"short_form": "VFB_00017894",
"label": "adult brain template JFRC2"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0001/7233/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017233",
"types": [
"Entity",
"Individual",
"VFB"
],
"short_form": "VFBc_00017233",
"label": "cluster 3.500_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017233",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cluster",
"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00017233",
"label": "cluster 3.500"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00101567",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00101567",
"label": "JRC2018Unisex_c"
},
"index": [],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00101567",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00101567",
"label": "JRC2018Unisex"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0001/7233/VFB_00101567/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017233",
"types": [
"Entity",
"Individual",
"VFB"
],
"short_form": "VFBc_00017233",
"label": "cluster 3.500_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017098",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cluster",
"Individual",
"Nervous_system",
"VFB",
"has_image"
],
"short_form": "VFB_00017098",
"label": "cluster 3.635"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017894",
"types": [
"Entity",
"Individual",
"Template",
"VFB"
],
"short_form": "VFBc_00017894",
"label": "JFRC2_template_c"
},
"index": [],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00017894",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Template",
"VFB",
"has_image"
],
"short_form": "VFB_00017894",
"label": "adult brain template JFRC2"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0001/7098/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00017098",
"types": [
"Entity",
"Individual",
"VFB"
],
"short_form": "VFBc_00017098",
"label": "cluster 3.635_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
}
],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
32 - material anatomical entity [CARO_0000006]
An anatomical entity that has mass.
material anatomical entity
ID: CARO_0000006
Anatomy
An anatomical entity that has mass.
Open in VFB 3D Browser →Classification
Relationships
- bearer of: mass
Downloads
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
Image files aligned to VDRC_VT046403_LexAGAD_attP40_2:
Image files aligned to VDRC_VT029622_LexAGAD_attP40_2:
Image files aligned to VDRC_VT010714_LexAGAD_attP40_2:
Image files aligned to VDRC_VT008182_LexAGAD_attP40_1:
Image files aligned to VDRC_VT007178_LexAGAD_attP40_3:
33 - multi-cell-part structure [CARO_0001000]
A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part. Examples: a bundle of neuron projections in the brain; a region neuropil in an arthropod central nervous system; a region of cortex (preikaryal rind) in an arthropod brain.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen multi-cell-part structure in VFB
Example Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0001000",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001000",
"label": "multi-cell-part structure"
},
"description": [
"A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part."
],
"comment": [
"Examples: a bundle of neuron projections in the brain; a region neuropil in an arthropod central nervous system; a region of cortex (preikaryal rind) in an arthropod brain."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001008",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001008",
"label": "gross anatomical part"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000003",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000003",
"label": "connected anatomical structure"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100016",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
16
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0016/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100016",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100015",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100015",
"label": "accessory prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
15
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0015/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100015",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100015",
"label": "accessory prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100022",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100022",
"label": "ventral prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
29
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0022/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100022",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100022",
"label": "ventral prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100014",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100014",
"label": "dorsal prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
14
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0014/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100014",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100014",
"label": "dorsal prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100018",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100018",
"label": "accessory mesothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
"Entity",
"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
18
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0018/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100018",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100018",
"label": "accessory mesothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
}
],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
34 - multi-cell-part structure [CARO_0001000]
A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part.
multi-cell-part structure
ID: CARO_0001000
Anatomy
A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part.
Examples: a bundle of neuron projections in the brain; a region neuropil in an arthropod central nervous system; a region of cortex (preikaryal rind) in an arthropod brain.
Open in VFB 3D Browser →Classification
Relationships
- has component: cell part
Downloads
Image files aligned to ventral median tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ITD haltere tract on adult VNC, JRC2018VU:
Image files aligned to ITD haltere chiasma on adult VNC, JRC2018VU:
Image files aligned to commissure of Fine Fibers of the ITD on adult VNC, JRC2018VU:
Image files aligned to intermediate tract of dorsal cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ventral lateral tract on adult VNC, JRC2018VU:
Image files aligned to median dorsal abdominal tract on adult VNC, JRC2018VU:
Image files aligned to dorsal median tract on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract on adult VNC, JRC2018VU:
35 - multicellular anatomical structure [CARO_0010000]
An anatomical structure that has more than one cell as a part.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen multicellular anatomical structure in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0010000",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0010000",
"label": "multicellular anatomical structure"
},
"description": [
"An anatomical structure that has more than one cell as a part."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0000003",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000003",
"label": "connected anatomical structure"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001008",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001008",
"label": "gross anatomical part"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0000053",
"label": "bearer of",
"type": "bearer_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/PATO_0001993",
"types": [
"Entity",
"Class"
],
"short_form": "PATO_0001993",
"label": "multicellular"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
36 - multicellular anatomical structure [CARO_0010000]
An anatomical structure that has more than one cell as a part.
multicellular anatomical structure
ID: CARO_0010000
Anatomy
An anatomical structure that has more than one cell as a part.
Open in VFB 3D Browser →Classification
Relationships
- bearer of: multicellular
37 - multicellular organism [CARO_0000012]
Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell. MH: Can’t define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history. MH: Can’t define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history. MH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities. MH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen multicellular organism in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000012",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0000012",
"label": "multicellular organism"
},
"description": [
"Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell."
],
"comment": [
"MH: Can't define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history.",
"MH: Can't define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history. \n\nMH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities.",
"MH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/NCBITaxon_131567",
"types": [
"Entity",
"Class"
],
"short_form": "NCBITaxon_131567",
"label": "cellular organisms"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0010004",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0010004",
"label": "cellular organism"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
38 - multicellular organism [CARO_0000012]
Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell.
multicellular organism
ID: CARO_0000012
Anatomy
Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell.
MH: Can't define this class based on 2 or more cells because most multi cellular organisms (if not all) have only a single cell at some point in life history. MH: sexual subtypes should probably be logically defined based on sexual processes or sex qualities.
Open in VFB 3D Browser →Classification
39 - neuron projection bundle [CARO_0001001]
[neuron projection bundle; dorsal prothoracic nerve on adult VNS template, Court2018; prothoracic leg nerve on adult VNS template, Court2018; adult VNS template - Court2018; accessory prothoracic nerve on adult VNS template, Court2018; accessory mesothoracic nerve on adult VNS template, Court2018; computer graphic; multi-cell-part structure; ventral prothoracic nerve on adult VNS template, Court2018]
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen neuron projection bundle in VFB
Example Images
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0001001",
"symbol": "",
"types": [
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"Anatomy",
"Class"
],
"short_form": "CARO_0001001",
"label": "neuron projection bundle"
},
"description": [],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001000",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001000",
"label": "multi-cell-part structure"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100016",
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"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"label": "adult VNS template - Court2018_c"
},
"index": [
16
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
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"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0016/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100016",
"types": [
"Entity",
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],
"short_form": "VFBc_00100016",
"label": "prothoracic leg nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
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"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100015",
"types": [
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"Anatomy",
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"has_image"
],
"short_form": "VFB_00100015",
"label": "accessory prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
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"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
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"label": "adult VNS template - Court2018_c"
},
"index": [
15
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
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"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0015/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100015",
"types": [
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"label": "accessory prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100022",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100022",
"label": "ventral prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
29
],
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
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"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0022/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100022",
"types": [
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],
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"label": "ventral prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
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],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
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"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100014",
"types": [
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"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100014",
"label": "dorsal prothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
14
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
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"Anatomy",
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"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0014/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100014",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100014",
"label": "dorsal prothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
},
{
"anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100018",
"types": [
"Entity",
"Adult",
"Anatomy",
"Individual",
"Nervous_system",
"Neuron_projection_bundle",
"has_image"
],
"short_form": "VFB_00100018",
"label": "accessory mesothoracic nerve on adult VNS template, Court2018"
},
"channel_image": {
"image": {
"template_channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100000",
"types": [
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"Individual",
"Template"
],
"short_form": "VFBc_00100000",
"label": "adult VNS template - Court2018_c"
},
"index": [
18
],
"template_anatomy": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFB_00100000",
"types": [
"Entity",
"Adult",
"Anatomy",
"Ganglion",
"Individual",
"Nervous_system",
"Template",
"has_image"
],
"short_form": "VFB_00100000",
"label": "adult VNS template - Court2018"
},
"image_folder": "http://www.virtualflybrain.org/data/VFB/i/0010/0018/"
},
"channel": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/VFBc_00100018",
"types": [
"Entity",
"Individual"
],
"short_form": "VFBc_00100018",
"label": "accessory mesothoracic nerve on adult VNS template, Court2018_c"
},
"imaging_technique": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbi_00000224",
"types": [
"Entity",
"Class"
],
"short_form": "FBbi_00000224",
"label": "computer graphic"
}
}
}
],
"pub_syn": [],
"def_pubs": []
}
40 - neuron projection bundle [CARO_0001001]
A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.
neuron projection bundle
ID: CARO_0001001
Anatomy
A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.
Open in VFB 3D Browser →Classification
Relationships
- bearer of: fiber shaped
Downloads
Image files aligned to ventral median tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ITD haltere tract on adult VNC, JRC2018VU:
Image files aligned to ITD haltere chiasma on adult VNC, JRC2018VU:
Image files aligned to commissure of Fine Fibers of the ITD on adult VNC, JRC2018VU:
Image files aligned to intermediate tract of dorsal cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to ventral lateral tract on adult VNC, JRC2018VU:
Image files aligned to median dorsal abdominal tract on adult VNC, JRC2018VU:
Image files aligned to dorsal median tract on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract of ventral cervical fasciculus on adult VNC, JRC2018VU:
Image files aligned to dorsal lateral tract on adult VNC, JRC2018VU:
41 - organism [CARO_0001010]
Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
organism
ID: CARO_0001010
Class
Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
Open in VFB 3D Browser →Classification
Alternative Names
| Synonym | Scope | Reference |
|---|---|---|
| organism or virus or viroid | exact synonym |
42 - organism or virus or viroid [CARO_0001010]
Material anatomical entity that is a member of an individual species or is a viral or viroid particle.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen organism or virus or viroid in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0001010",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "CARO_0001010",
"label": "organism or virus or viroid"
},
"description": [
"Material anatomical entity that is a member of an individual species or is a viral or viroid particle."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/PCO_0000031",
"types": [
"Entity",
"Class"
],
"short_form": "PCO_0000031",
"label": "organismal entity"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
43 - organism subdivision [CARO_0000032]
Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen organism subdivision in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000032",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000032",
"label": "organism subdivision"
},
"description": [
"Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument."
],
"comment": []
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0010000",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0010000",
"label": "multicellular anatomical structure"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
44 - organism subdivision [CARO_0000032]
Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument.
organism subdivision
ID: CARO_0000032
Anatomy
Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument.
Open in VFB 3D Browser →Classification
45 - organism substance [CARO_0000004]
Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism’s own genome. Note - CARO explicitly declares organisms substances to be part of (some) organism.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen organism substance in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/CARO_0000004",
"symbol": "",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0000004",
"label": "organism substance"
},
"description": [
"Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism's own genome."
],
"comment": [
"Note - CARO explicitly declares organisms substances to be part of (some) organism."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/CARO_0001008",
"types": [
"Entity",
"Anatomy",
"Class"
],
"short_form": "CARO_0001008",
"label": "gross anatomical part"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "portion of organism substance",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
46 - organism substance [CARO_0000004]
Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism’s own genome.
organism substance
ID: CARO_0000004
Anatomy
Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism's own genome.
Note - CARO explicitly declares organisms substances to be part of (some) organism.
Open in VFB 3D Browser →Classification
Alternative Names
| Synonym | Scope | Reference |
|---|---|---|
| portion of organism substance | exact synonym |