TR_J_pseudogene [SO_0002104]
A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain. These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/SO_0002104",
"symbol": "",
"types": [
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"Class"
],
"short_form": "SO_0002104",
"label": "TR_J_pseudogene"
},
"description": [
"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain."
],
"comment": [
"These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0002099",
"types": [
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"Class"
],
"short_form": "SO_0002099",
"label": "T_cell_receptor_pseudogene"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "T cell receptor Joining pseudogene",
"type": ""
},
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},
{
"synonym": {
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"label": "T_cell_receptor_J_pseudogene",
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},
{
"synonym": {
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"label": "TR J pseudogene",
"type": ""
},
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"label": ""
},
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}
},
{
"synonym": {
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"label": "T_cell_receptor_Joining_pseudogene",
"type": ""
},
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],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "T cell receptor J pseudogene",
"type": ""
},
"pub": {
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"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
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],
"short_form": "Unattributed",
"label": ""
},
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"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": [
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"symbol": "",
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"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
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