stop_gained [SO_0001587]
A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide. EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence).
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/SO_0001587",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0001587",
"label": "stop_gained"
},
"description": [
"A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide."
],
"comment": [
"EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence)."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001906",
"types": [
"Entity",
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],
"short_form": "SO_0001906",
"label": "feature_truncation"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001992",
"types": [
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],
"short_form": "SO_0001992",
"label": "nonsynonymous_variant"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "VAT:prematureStop",
"type": ""
},
"pub": {
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"short_form": "Unattributed",
"label": ""
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"FlyBase": "",
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"DOI": ""
}
},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "Seattleseq:stop-gained",
"type": ""
},
"pub": {
"core": {
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"iri": "http://flybase.org/reports/Unattributed",
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"label": ""
},
"FlyBase": "",
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},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "snpEff:STOP_GAINED",
"type": ""
},
"pub": {
"core": {
"symbol": "",
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"types": [
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"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
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},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "nonsense codon",
"type": ""
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"label": ""
},
"FlyBase": "",
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"DOI": ""
}
},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "VEP:stop_gained",
"type": ""
},
"pub": {
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"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"short_form": "Unattributed",
"label": ""
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"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "VAAST:stop_gained",
"type": ""
},
"pub": {
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"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_related_synonym",
"label": "stop codon gained",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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],
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"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_related_synonym",
"label": "Seattleseq:stop-gained-near-splice",
"type": "http://purl.obolibrary.org/obo/so#VAR"
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
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"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": []
}
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