sequence_variant_causing_nonconservative_missense_codon_change_in_transcript [SO_1000061]

The amino acid change following from the codon change changes the gross properties (size, charge, hydrophobicity) of the amino acid in that position. The exact rules need to be stated, a common set of rules can be derived from e.g. BLOSUM62 amino acid distance matrix.
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Open sequence_variant_causing_nonconservative_missense_codon_change_in_transcript in VFB

Term Information

  • ID: SO_1000061
  • Name: sequence_variant_causing_nonconservative_missense_codon_change_in_transcript
  • Definition: The amino acid change following from the codon change changes the gross properties (size, charge, hydrophobicity) of the amino acid in that position.
  • Synonyms:
  • Type:
  • Comment: The exact rules need to be stated, a common set of rules can be derived from e.g. BLOSUM62 amino acid distance matrix.

VFB Term Json

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            "iri": "http://purl.obolibrary.org/obo/SO_1000061",
            "symbol": "",
            "types": [
                "Entity",
                "Class",
                "Deprecated"
            ],
            "short_form": "SO_1000061",
            "unique_facets": [
                "Deprecated"
            ],
            "label": "sequence_variant_causing_nonconservative_missense_codon_change_in_transcript"
        },
        "description": [
            "The amino acid change following from the codon change changes the gross properties (size, charge, hydrophobicity) of the amino acid in that position."
        ],
        "comment": [
            "The exact rules need to be stated, a common set of rules can be derived from e.g. BLOSUM62 amino acid distance matrix."
        ]
    },
    "query": "Get JSON for Class",
    "version": "c58c844",
    "parents": [],
    "relationships": [],
    "related_individuals": [],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [
        {
            "synonym": {
                "scope": "has_exact_synonym",
                "label": "sequence variant causing nonconservative missense codon change in transcript",
                "type": ""
            },
            "pub": {
                "core": {
                    "symbol": "",
                    "iri": "http://flybase.org/reports/Unattributed",
                    "types": [
                        "Entity",
                        "Individual",
                        "pub"
                    ],
                    "short_form": "Unattributed",
                    "unique_facets": [
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                    ],
                    "label": ""
                },
                "FlyBase": "",
                "PubMed": "",
                "DOI": ""
            }
        },
        {
            "synonym": {
                "scope": "has_related_synonym",
                "label": "mutation causing nonconservative missense codon change in transcript",
                "type": ""
            },
            "pub": {
                "core": {
                    "symbol": "",
                    "iri": "http://flybase.org/reports/Unattributed",
                    "types": [
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                    ],
                    "short_form": "Unattributed",
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                    ],
                    "label": ""
                },
                "FlyBase": "",
                "PubMed": "",
                "DOI": ""
            }
        }
    ],
    "def_pubs": []
}