novel replicon [GENO_0000684]
A genomic feature that represents an entirely new replicon in the genome, e.g. an extrachromosomal replicon or an extra copy of a chromosome. Novel replicons are considered as an ‘insertion’ in a genome, and as such, qualify as types of sequence_alterations and variant alleles. There is no pre-existing locus that it modifies, however, and thus it is not really an ‘allele of’ a named locus. But conceptually, we still consider these to represent genetic variants and classify them as variant alleles.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/GENO_0000684",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000684",
"label": "novel replicon"
},
"description": [
"A genomic feature that represents an entirely new replicon in the genome, e.g. an extrachromosomal replicon or an extra copy of a chromosome."
],
"comment": [
"Novel replicons are considered as an 'insertion' in a genome, and as such, qualify as types of sequence_alterations and variant alleles. There is no pre-existing locus that it modifies, however, and thus it is not really an 'allele of' a named locus. But conceptually, we still consider these to represent genetic variants and classify them as variant alleles."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001059",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0001059",
"label": "sequence_alteration"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/GENO_0000207",
"label": "has_sequence_attribute",
"type": "has_sequence_attribute"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/GENO_0000685",
"types": [
"Entity",
"Class"
],
"short_form": "GENO_0000685",
"label": "novel"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
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