genomic genotype [GENO_0000899]

A genotype that describes the total variation in heritable genomic sequence of a cell or organism, typically in terms of alterations from some reference or background genotype. 1. A genomic genotype is a short-hand specification of a genome that uses a representational syntax comprised of information about a reference genome (‘genomic background’), and all specific variants from this reference (the ‘genomic variation complement’). Conceptually, this variant genome sequence can be resolved by substituting all sequences specified by the ‘genomic variation complement’ for the corresponding sequences in the reference ‘genomic background’ sequence. 2. ‘Heritable’ genomic sequence is that which is passed on to subsequent generations of cells/organisms, and includes all chromosomal sequences, the mitochondrial genome, and any transmissable extrachromosomal replicons.
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Open genomic genotype in VFB

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/GENO_0000899",
            "symbol": "",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000899",
            "label": "genomic genotype"
        },
        "description": [
            "A genotype that describes the total variation in heritable genomic sequence of a cell or organism, typically in terms of alterations from some reference or background genotype."
        ],
        "comment": [
            "1. A genomic genotype is a short-hand specification of a genome that uses a representational syntax comprised of information about a reference genome ('genomic background'), and all specific variants from this reference (the 'genomic variation complement').  Conceptually, this variant genome sequence can be resolved by substituting all sequences specified by the 'genomic variation complement' for the corresponding sequences in the reference  'genomic background' sequence.\n\n2. 'Heritable' genomic sequence is that which is passed on to subsequent generations of cells/organisms, and includes all chromosomal sequences, the mitochondrial genome, and any transmissable extrachromosomal replicons."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/GENO_0000897",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000897",
            "label": "genomic entity"
        },
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/GENO_0000719",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000719",
            "label": "intrinsic genotype"
        }
    ],
    "relationships": [
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/GENO_0000385",
                "label": "has_reference_part",
                "type": "has_reference_part"
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/GENO_0000611",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "GENO_0000611",
                "label": "genomic background"
            }
        },
        {
            "relation": {
                "iri": "http://purl.obolibrary.org/obo/IAO_0000219",
                "label": "denotes",
                "type": "denotes"
            },
            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/SO_0001026",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "SO_0001026",
                "label": "genome"
            }
        }
    ],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
                    "Entity",
                    "Individual",
                    "pub"
                ],
                "short_form": "Unattributed",
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
    ]
}