broad specificity oxidative DNA demethylase activity [GO_0035516]

Catalysis of the reaction: a methylated nucleobase within DNA + 2-oxoglutarate + O2 = a nucleobase within DNA + formaldehyde + succinate + CO2. Catalyzes oxidative demethylation of the DNA base lesions N1- methyladenine, N3-methylcytosine, N1-methylguanine, and N3- methylthymine. Can also act of RNA.

broad specificity oxidative DNA demethylase activity

ID: GO_0035516

Class

Catalysis of the reaction: a methylated nucleobase within DNA + 2-oxoglutarate + O2 = a nucleobase within DNA + formaldehyde + succinate + CO2. Catalyzes oxidative demethylation of the DNA base lesions N1- methyladenine, N3-methylcytosine, N1-methylguanine, and N3- methylthymine. Can also act of RNA.

This reaction directly reverses the alkylation on a nucleotide within DNA. Do not confuse with 5-methylcytosine dioxygenase activity ; GO:0070579, which removes the methyl group from position 5 of cytosine in DNA via oxidation of the 5-methylcytosine, followed by removal of the oxidated base by the base excision repair system.

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Classification

Alternative Names

Synonym Scope Reference
5fC dioxygenase narrow synonym
5-formylcytosine dioxygenase activity narrow synonym
5hmC dioxygenase narrow synonym
N3-methylcytosine demethylase activity narrow synonym
5-hydroxymethylcytosine dioxygenase activity narrow synonym
N1-methyladenine demethylase activity narrow synonym
1-ethyladenine demethylase activity narrow synonym
oxidative DNA demethylase activity broad synonym
2-oxoglutarate-dependent DNA demethylase exact synonym 17991826

References