stop_gained [SO_0001587]

A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide. EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence).

Open stop_gained in VFB

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/SO_0001587",
            "symbol": "",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "SO_0001587",
            "label": "stop_gained"
        },
        "description": [
            "A sequence variant whereby at least one base of a codon is changed, resulting in a premature stop codon, leading to a shortened polypeptide."
        ],
        "comment": [
            "EBI term: Stop gained - In coding sequence, resulting in the gain of a stop codon (i.e. leading to a shortened peptide sequence)."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/SO_0001906",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "SO_0001906",
            "label": "feature_truncation"
        },
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/SO_0001992",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "SO_0001992",
            "label": "nonsynonymous_variant"
        }
    ],
    "relationships": [],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [
        {
            "synonym": {
                "scope": "has_exact_synonym",
                "label": "VAT:prematureStop",
                "type": ""
            },
            "pub": {
                "core": {
                    "symbol": "",
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                    "label": ""
                },
                "FlyBase": "",
                "PubMed": "",
                "DOI": ""
            }
        },
        {
            "synonym": {
                "scope": "has_exact_synonym",
                "label": "Seattleseq:stop-gained",
                "type": ""
            },
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                },
                "FlyBase": "",
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            }
        },
        {
            "synonym": {
                "scope": "has_exact_synonym",
                "label": "snpEff:STOP_GAINED",
                "type": ""
            },
            "pub": {
                "core": {
                    "symbol": "",
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                "FlyBase": "",
                "PubMed": "",
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        },
        {
            "synonym": {
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                "label": "nonsense codon",
                "type": ""
            },
            "pub": {
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                    "symbol": "",
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                "FlyBase": "",
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        },
        {
            "synonym": {
                "scope": "has_exact_synonym",
                "label": "VEP:stop_gained",
                "type": ""
            },
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                },
                "FlyBase": "",
                "PubMed": "",
                "DOI": ""
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        },
        {
            "synonym": {
                "scope": "has_exact_synonym",
                "label": "VAAST:stop_gained",
                "type": ""
            },
            "pub": {
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                },
                "FlyBase": "",
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            }
        },
        {
            "synonym": {
                "scope": "has_related_synonym",
                "label": "stop codon gained",
                "type": ""
            },
            "pub": {
                "core": {
                    "symbol": "",
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                    ],
                    "short_form": "Unattributed",
                    "label": ""
                },
                "FlyBase": "",
                "PubMed": "",
                "DOI": ""
            }
        },
        {
            "synonym": {
                "scope": "has_related_synonym",
                "label": "Seattleseq:stop-gained-near-splice",
                "type": "http://purl.obolibrary.org/obo/so#VAR"
            },
            "pub": {
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                },
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            }
        }
    ],
    "def_pubs": []
}